7LIQ
X-ray structure of SPOP MATH domain (S119A)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-07-25 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9793 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 77.457, 77.457, 106.246 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.650 - 1.980 |
R-factor | 0.195 |
Rwork | 0.192 |
R-free | 0.22510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7lin |
RMSD bond length | 0.009 |
RMSD bond angle | 1.046 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.16_3549) |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.650 | 2.050 |
High resolution limit [Å] | 1.980 | 1.980 |
Rmerge | 0.067 | 0.998 |
Rmeas | 0.068 | 1.015 |
Rpim | 0.011 | 0.182 |
Number of reflections | 13677 | 1321 |
<I/σ(I)> | 29.41 | |
Completeness [%] | 100.0 | |
Redundancy | 36.8 | |
CC(1/2) | 1.000 | 0.898 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | Crystals were grown by the hanging drop method, mixing 2 ul of the SPOP MATH S119A at 20 mg/ml in 20 mM Tris-HCl, pH 7.6, 150 mM NaCl, 5 mM DTT and 2 ul of the reservoir solution for the drop. The reservoir solution was 0.2 M (NH4)2SO4, 0.1 M BIS-Tris, pH 6.5, 25% (w/v) PEG 3,350). |