7LGP
DapE enzyme from Shigella flexneri
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-BM |
Synchrotron site | APS |
Beamline | 19-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-09-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | H 3 2 |
Unit cell lengths | 180.141, 180.141, 200.091 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.680 - 1.910 |
R-factor | 0.1603 |
Rwork | 0.159 |
R-free | 0.18670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4o23 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.561 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.680 | 47.680 | 1.940 |
High resolution limit [Å] | 1.910 | 5.180 | 1.910 |
Rmerge | 0.146 | 0.066 | 1.267 |
Rmeas | 0.155 | 0.070 | 1.415 |
Rpim | 0.053 | 0.024 | 0.618 |
Number of reflections | 95874 | 4997 | 4613 |
<I/σ(I)> | 7.7 | 1.03 | |
Completeness [%] | 99.8 | 100 | 96.6 |
Redundancy | 8.1 | 8.1 | 4.9 |
CC(1/2) | 0.997 | 0.998 | 0.509 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 289 | 2.8 M ammonium sulfate, 150 mM Tris buffer pH 8.0, 10 mM sodium potassium tartrate |