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7LDX

SARS-CoV-2 Main protease immature form - F2X Entry Library E06 fragment

Replaces:  7KW5
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsLNLS SIRIUS BEAMLINE MANACA
Synchrotron siteLNLS SIRIUS
BeamlineMANACA
Temperature [K]100
Detector technologyPIXEL
Collection date2020-09-03
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.35502
Spacegroup nameP 21 21 21
Unit cell lengths67.389, 101.679, 101.916
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution56.210 - 2.230
R-factor0.2446
Rwork0.242
R-free0.27270
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7kfi
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]56.21056.2102.300
High resolution limit [Å]2.2308.9202.230
Rmerge0.3180.0880.664
Rmeas0.4490.1240.939
Rpim0.3180.0880.664
Total number of observations405311028392
Number of reflections21562624211
<I/σ(I)>5.111.91.3
Completeness [%]61.599.26.4
Redundancy1.91.61.9
CC(1/2)0.6490.8980.267
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION2930.1 M MES, pH 6.7, 5% DMSO, 8% PEG4000

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PDB entries from 2024-10-30

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