7L32
Molybdopterin biosynthesis MoaE protein from Burkholderia ambifaria MC40-6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-07-30 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 111.680, 93.290, 65.250 |
Unit cell angles | 90.00, 90.10, 90.00 |
Refinement procedure
Resolution | 48.250 - 1.900 |
R-factor | 0.1801 |
Rwork | 0.179 |
R-free | 0.20310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2qie as per Morda |
RMSD bond length | 0.008 |
RMSD bond angle | 0.847 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX (1.19RC4-4035) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.950 |
High resolution limit [Å] | 1.900 | 8.500 | 1.900 |
Rmerge | 0.048 | 0.030 | 0.392 |
Rmeas | 0.056 | 0.035 | 0.474 |
Number of reflections | 52076 | 614 | 3372 |
<I/σ(I)> | 16.26 | 33.77 | 3.04 |
Completeness [%] | 98.8 | 97.9 | 87.4 |
Redundancy | 3.672 | 3.393 | 2.991 |
CC(1/2) | 0.999 | 0.998 | 0.915 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 287 | Molecular Dimensions Morpheus screen, B5:10% w/v PEG 20 000, 20% v/v PEG MME 550 0.03 M of each sodium fluoride, sodium bromide, sodium iodide 0.1 M MOPS/HEPES-Na pH 7.5: BuamA.00098.a.B1.PS37913 at 49.6 mg/ml + 0.5% n-Octyl-??-D-glucopyranoside: cryo: direct: tray 317329b5, puck xxu3-9 |