7KRF
Crystal Structure of HIV-1 Reverse Transcriptase in Complex with (E)-4-(3-(2-cyanovinyl)-5-fluorophenoxy)-3-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenyl sulfurofluoridate (JLJ710)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 226.002, 69.742, 105.414 |
Unit cell angles | 90.00, 105.59, 90.00 |
Refinement procedure
Resolution | 57.790 - 2.600 |
R-factor | 0.2227 |
Rwork | 0.221 |
R-free | 0.26510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5tw3 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 57.790 | 57.000 | 2.750 |
High resolution limit [Å] | 2.600 | 7.770 | 2.600 |
Rmerge | 0.062 | 0.034 | 1.747 |
Rmeas | 0.067 | 0.037 | 1.897 |
Number of reflections | 48679 | 1902 | 7608 |
<I/σ(I)> | 15.88 | 43.62 | 1.08 |
Completeness [%] | 98.9 | 98 | 96.4 |
Redundancy | 6.68 | 6.02 | 6.565 |
CC(1/2) | 0.999 | 0.998 | 0.582 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 50 mM imidazole pH 6.5, 18% PEG 8,000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine |