7KRD
Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 4-(3-chloro-5-cyanophenoxy)-3-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenyl sulfurofluoridate (JLJ702)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-17 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 224.403, 69.471, 104.764 |
Unit cell angles | 90.00, 105.81, 90.00 |
Refinement procedure
Resolution | 29.232 - 2.700 |
R-factor | 0.2222 |
Rwork | 0.220 |
R-free | 0.26800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5tw3 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.232 | 29.232 | 2.860 |
High resolution limit [Å] | 2.700 | 7.840 | 2.700 |
Rmerge | 0.074 | 0.021 | 1.754 |
Rmeas | 0.080 | 0.022 | 1.892 |
Total number of observations | 299064 | ||
Number of reflections | 42983 | 1809 | 6870 |
<I/σ(I)> | 17.06 | 73.53 | 1.03 |
Completeness [%] | 99.8 | 97.5 | 99.7 |
Redundancy | 6.958 | 6.777 | 7.16 |
CC(1/2) | 0.999 | 1.000 | 0.652 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 50 mM imidazole pH 6.5, 18% PEG 8,000, 100 mM ammonium sulfate, 15 mM magnesium sulfate, and 5 mM spermine |