7KQO
Crystal structure of SARS-CoV-2 NSP3 macrodomain (P43 crystal form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.03324 |
Spacegroup name | P 43 |
Unit cell lengths | 88.720, 88.720, 39.680 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.360 - 0.850 |
R-factor | 0.1211 |
Rwork | 0.120 |
R-free | 0.13840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | NA |
Data reduction software | XDS (0.94) |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.360 | 44.360 | 0.870 |
High resolution limit [Å] | 0.850 | 3.800 | 0.850 |
Rmerge | 0.043 | 0.033 | 1.848 |
Rmeas | 0.048 | 0.036 | 2.215 |
Total number of observations | 2357391 | ||
Number of reflections | 270575 | 5942 | 39161 |
<I/σ(I)> | 13.58 | 59.64 | 0.56 |
Completeness [%] | 99.8 | 99.9 | 99.3 |
Redundancy | 4.434 | 7.144 | 3.216 |
CC(1/2) | 0.999 | 0.998 | 0.250 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9.5 | 293 | 100 mM CHES, 28% PEG 3000 |