7KND
C1B domain of Protein kinase C in apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER X8 PROTEUM |
Temperature [K] | 120 |
Detector technology | PIXEL |
Collection date | 2020-07-20 |
Detector | Bruker PHOTON II |
Wavelength(s) | 1.54 |
Spacegroup name | P 41 |
Unit cell lengths | 37.264, 37.264, 31.888 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.260 - 1.390 |
R-factor | 0.2196 |
Rwork | 0.216 |
R-free | 0.24640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ptq |
RMSD bond length | 0.009 |
RMSD bond angle | 1.354 |
Data reduction software | SAINT |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.260 | 37.260 | 1.410 |
High resolution limit [Å] | 1.390 | 7.610 | 1.390 |
Rmerge | 0.056 | 0.051 | 1.659 |
Rmeas | 0.062 | 0.056 | 1.895 |
Rpim | 0.025 | 0.023 | 0.905 |
Total number of observations | 56048 | 389 | 1831 |
Number of reflections | 8924 | 64 | 430 |
<I/σ(I)> | 15 | 42.4 | 0.8 |
Completeness [%] | 100.0 | 99.5 | 100 |
Redundancy | 6.3 | 6.1 | 4.3 |
CC(1/2) | 0.995 | 0.993 | 0.522 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277.15 | Screen: 0.2 M Ammonium acetate, 0.1 M Sodium phosphate, 30% Isopropanol, pH 6.8, Drop condition: Protein: 1.2 mM in MES pH 6.5, 150 mM KCl |