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7KND

C1B domain of Protein kinase C in apo form

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsBRUKER X8 PROTEUM
Temperature [K]120
Detector technologyPIXEL
Collection date2020-07-20
DetectorBruker PHOTON II
Wavelength(s)1.54
Spacegroup nameP 41
Unit cell lengths37.264, 37.264, 31.888
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.260 - 1.390
R-factor0.2196
Rwork0.216
R-free0.24640
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ptq
RMSD bond length0.009
RMSD bond angle1.354
Data reduction softwareSAINT
Data scaling softwareAimless (0.7.4)
Phasing softwareMOLREP
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]37.26037.2601.410
High resolution limit [Å]1.3907.6101.390
Rmerge0.0560.0511.659
Rmeas0.0620.0561.895
Rpim0.0250.0230.905
Total number of observations560483891831
Number of reflections892464430
<I/σ(I)>1542.40.8
Completeness [%]100.099.5100
Redundancy6.36.14.3
CC(1/2)0.9950.9930.522
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5277.15Screen: 0.2 M Ammonium acetate, 0.1 M Sodium phosphate, 30% Isopropanol, pH 6.8, Drop condition: Protein: 1.2 mM in MES pH 6.5, 150 mM KCl

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PDB entries from 2024-10-09

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