7KD0
Ricin bound to VHH antibody V2C11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-01-22 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 76.223, 100.817, 129.712 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.428 - 2.768 |
R-factor | 0.2095 |
Rwork | 0.207 |
R-free | 0.25450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2aai 3ezj |
RMSD bond length | 0.003 |
RMSD bond angle | 0.599 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.820 |
High resolution limit [Å] | 2.768 | 7.510 | 2.770 |
Rmerge | 0.179 | 0.068 | 0.816 |
Rmeas | 0.198 | 0.075 | 0.985 |
Rpim | 0.081 | 0.030 | 0.541 |
Number of reflections | 26051 | 1422 | 1242 |
<I/σ(I)> | 4.7 | ||
Completeness [%] | 99.5 | 98.5 | 95.3 |
Redundancy | 5.5 | 6 | 2.9 |
CC(1/2) | 0.996 | 0.685 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 100 mM Zinc Acetate, 14% PEG 8,000, 22% Glycerol, 80 mM NaCaco pH 6.5, 3% D+Galactose |