Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7KD0

Ricin bound to VHH antibody V2C11

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007
Temperature [K]100
Detector technologyCCD
Collection date2018-01-22
DetectorRIGAKU SATURN 944
Wavelength(s)1.54
Spacegroup nameP 21 21 21
Unit cell lengths76.223, 100.817, 129.712
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution32.428 - 2.768
R-factor0.2095
Rwork0.207
R-free0.25450
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2aai 3ezj
RMSD bond length0.003
RMSD bond angle0.599
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.820
High resolution limit [Å]2.7687.5102.770
Rmerge0.1790.0680.816
Rmeas0.1980.0750.985
Rpim0.0810.0300.541
Number of reflections2605114221242
<I/σ(I)>4.7
Completeness [%]99.598.595.3
Redundancy5.562.9
CC(1/2)0.9960.685
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION293100 mM Zinc Acetate, 14% PEG 8,000, 22% Glycerol, 80 mM NaCaco pH 6.5, 3% D+Galactose

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon