7KB8
Co-crystal structure of alpha glucosidase with compound 8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-04-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 32 |
Unit cell lengths | 102.782, 102.782, 240.124 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.021 - 2.385 |
R-factor | 0.1743 |
Rwork | 0.174 |
R-free | 0.21030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5f0e |
RMSD bond length | 0.007 |
RMSD bond angle | 0.919 |
Data reduction software | HKL-2000 (v717.1) |
Data scaling software | HKL-2000 (v717.1) |
Phasing software | PHENIX (1.14_3228) |
Refinement software | PHENIX (1.14_3228) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.021 | 2.470 |
High resolution limit [Å] | 2.385 | 2.385 |
Rmerge | 0.115 | 0.923 |
Rmeas | 0.125 | 1.020 |
Rpim | 0.048 | 0.421 |
Number of reflections | 112724 | 11064 |
<I/σ(I)> | 8.42 | |
Completeness [%] | 99.7 | 97.93 |
Redundancy | 6.6 | 5.2 |
CC(1/2) | 0.992 | 0.537 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 297 | 0.09M NPS, 0.1M Buffer system 1 pH 7.0, 29%v/v P500MME_P20K (Morpheus screen, condition C1) |