7K7R
EBNA1 peptide AA386-405 with Fab MS39p2w174
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-05-15 |
Detector | DECTRIS PILATUS3 X 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 119.657, 137.562, 178.996 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.140 - 2.500 |
R-factor | 0.2131 |
Rwork | 0.211 |
R-free | 0.25220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lri |
Data reduction software | XDS (20200131) |
Data scaling software | Aimless (3.3.22) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.140 | 45.140 | 2.240 |
High resolution limit [Å] | 2.190 | 10.730 | 2.190 |
Rmerge | 0.156 | 0.024 | 5.921 |
Rmeas | 0.186 | 0.029 | 7.776 |
Rpim | 0.101 | 0.016 | 4.972 |
Total number of observations | 231612 | 2058 | 7430 |
Number of reflections | 51233 | 671 | 3637 |
<I/σ(I)> | 5.5 | 31.7 | 0.1 |
Completeness [%] | 96.1 | 94.6 | 78 |
Redundancy | 3.2 | 3.1 | 2 |
CC(1/2) | 0.995 | 0.999 | 0.126 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.9 | 294 | Fab (15 mg/ml) mixed with peptide at a 1:7.5 molar ratio. 0.48M Sodium Citrate, 0.72M Sodium/Potassium Phosphate, 3% MPD (v/v), 0.1M HEPES, pH 6.9. |