7K6H
Crystal structure of the first bromodomain (BD1) of human BRD4 bound to XMD8-92
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 22-ID |
| Synchrotron site | APS |
| Beamline | 22-ID |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2017-04-05 |
| Detector | MARMOSAIC 300 mm CCD |
| Wavelength(s) | 1.000 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 41.820, 52.030, 57.270 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 28.635 - 1.500 |
| R-factor | 0.1662 |
| Rwork | 0.165 |
| R-free | 0.19030 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 7k6g |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.871 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.12-2829_2829) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 28.635 | 28.635 | 1.540 |
| High resolution limit [Å] | 1.500 | 6.710 | 1.500 |
| Rmerge | 0.107 | 0.109 | 0.096 |
| Rmeas | 0.116 | 0.119 | 0.104 |
| Total number of observations | 144304 | ||
| Number of reflections | 20618 | 273 | 1515 |
| <I/σ(I)> | 18.6 | 17.77 | 15.63 |
| Completeness [%] | 99.9 | 98.6 | 100 |
| Redundancy | 6.999 | 5.538 | 7.059 |
| CC(1/2) | 0.991 | 0.978 | 0.992 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6, 30% w/v Polyethylene glycol 4,000 |






