7K6H
Crystal structure of the first bromodomain (BD1) of human BRD4 bound to XMD8-92
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-04-05 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.820, 52.030, 57.270 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.635 - 1.500 |
R-factor | 0.1662 |
Rwork | 0.165 |
R-free | 0.19030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7k6g |
RMSD bond length | 0.006 |
RMSD bond angle | 0.871 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.12-2829_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.635 | 28.635 | 1.540 |
High resolution limit [Å] | 1.500 | 6.710 | 1.500 |
Rmerge | 0.107 | 0.109 | 0.096 |
Rmeas | 0.116 | 0.119 | 0.104 |
Total number of observations | 144304 | ||
Number of reflections | 20618 | 273 | 1515 |
<I/σ(I)> | 18.6 | 17.77 | 15.63 |
Completeness [%] | 99.9 | 98.6 | 100 |
Redundancy | 6.999 | 5.538 | 7.059 |
CC(1/2) | 0.991 | 0.978 | 0.992 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6, 30% w/v Polyethylene glycol 4,000 |