7K5H
1.90 A resolution structure of WT BfrB from Pseudomonas aeruginosa in complex with a protein-protein interaction inhibitor KM-5-66
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-08-01 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 1.0000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 129.500, 194.495, 202.952 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.780 - 1.900 |
R-factor | 0.1594 |
Rwork | 0.158 |
R-free | 0.18930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5d8o |
RMSD bond length | 0.009 |
RMSD bond angle | 0.879 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (dev_3959) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.620 | 48.620 | 1.930 |
High resolution limit [Å] | 1.900 | 10.410 | 1.900 |
Rmerge | 0.105 | 0.047 | 0.998 |
Total number of observations | 1378627 | 8491 | 69341 |
Number of reflections | 200059 | 1337 | 9856 |
<I/σ(I)> | 11.5 | 29.1 | 2.2 |
Completeness [%] | 100.0 | 98.6 | 99.9 |
Redundancy | 6.9 | 6.4 | 7 |
CC(1/2) | 0.998 | 0.997 | 0.781 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 291 | 30% (v/v) PEG 200, 0.1M sodium acetate, 0.1M NaCl |