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7K5D

Ebola virus VP40 octameric ring generated by a DNA oligonucleotide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100.5
Detector technologyPIXEL
Collection date2019-04-17
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97946
Spacegroup nameP 4 2 2
Unit cell lengths80.438, 80.438, 47.281
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution40.760 - 1.780
R-factor0.1827
Rwork0.182
R-free0.19810
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4ldm
RMSD bond length0.007
RMSD bond angle0.929
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.18_3845)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.7601.820
High resolution limit [Å]1.7801.780
Rmerge0.0981.411
Number of reflections15385844
<I/σ(I)>15.52.4
Completeness [%]99.998.8
Redundancy12.311.8
CC(1/2)0.9980.874
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.62931 uL 3.5 mg/mL protein, 1 uL 75 mM sodium citrate tribasic pH 6.6, 150 mM ammonium acetate

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