7JN8
Crystal structure of the substrate-binding domain of E. coli DnaK in complex with the peptide RGNTLVIVSR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-04 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.5418 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 37.974, 95.477, 117.493 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.740 - 3.090 |
R-factor | 0.1845 |
Rwork | 0.178 |
R-free | 0.31860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dkz |
RMSD bond length | 0.006 |
RMSD bond angle | 1.451 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.170 |
High resolution limit [Å] | 3.090 | 8.460 | 3.120 |
Rmerge | 0.151 | 0.084 | 0.372 |
Rmeas | 0.187 | 0.106 | 0.485 |
Rpim | 0.107 | 0.063 | 0.308 |
Number of reflections | 3772 | 209 | 175 |
<I/σ(I)> | 4.2 | ||
Completeness [%] | 90.8 | 84.6 | 83.7 |
Redundancy | 2.4 | 2.1 | 1.9 |
CC(1/2) | 0.994 | 0.905 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 2.8 M (NH4)2SO4, 0.1 M K3PO4 |