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7JJD

Sarcin-ricin loop with guanosine monothiophosphate residue.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2018-04-10
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)0.97857
Spacegroup nameP 43
Unit cell lengths29.639, 29.639, 76.658
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 1.210
Rwork0.173
R-free0.23900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDB ID: 3S7C
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwareSHELX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.250
High resolution limit [Å]1.2102.6101.210
Rmerge0.0550.0340.538
Rmeas0.0620.0380.629
Rpim0.0280.0170.320
Total number of observations91157
Number of reflections1985420381912
<I/σ(I)>11.7
Completeness [%]99.299.695.6
Redundancy4.653.6
CC(1/2)0.9990.764
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293Crystallization set-ups were made by mixing 4 uL of 350 uM RNA solution [1 mM Na 2 EDTA (pH 8.0) and 10 mM Tris-HCl (pH 8.0)] with 2 uL of a crystallization buffer composed of 3.0 M ammonium sulfate, 10 mM magnesium chloride, 10 mM manganese chloride, and 50 mM potassium 3-(N-morpholino) propanesulfonic acid (MOPS), pH 7.0 at 18 C.

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PDB entries from 2024-11-13

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