7JJD
Sarcin-ricin loop with guanosine monothiophosphate residue.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-04-10 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97857 |
Spacegroup name | P 43 |
Unit cell lengths | 29.639, 29.639, 76.658 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.210 |
Rwork | 0.173 |
R-free | 0.23900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ID: 3S7C |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | SHELX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.250 |
High resolution limit [Å] | 1.210 | 2.610 | 1.210 |
Rmerge | 0.055 | 0.034 | 0.538 |
Rmeas | 0.062 | 0.038 | 0.629 |
Rpim | 0.028 | 0.017 | 0.320 |
Total number of observations | 91157 | ||
Number of reflections | 19854 | 2038 | 1912 |
<I/σ(I)> | 11.7 | ||
Completeness [%] | 99.2 | 99.6 | 95.6 |
Redundancy | 4.6 | 5 | 3.6 |
CC(1/2) | 0.999 | 0.764 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Crystallization set-ups were made by mixing 4 uL of 350 uM RNA solution [1 mM Na 2 EDTA (pH 8.0) and 10 mM Tris-HCl (pH 8.0)] with 2 uL of a crystallization buffer composed of 3.0 M ammonium sulfate, 10 mM magnesium chloride, 10 mM manganese chloride, and 50 mM potassium 3-(N-morpholino) propanesulfonic acid (MOPS), pH 7.0 at 18 C. |