7JGZ
Protocadherin gammaC4 EC1-4 crystal structure
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-02-07 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979180 |
Spacegroup name | I 21 21 21 |
Unit cell lengths | 75.220, 115.680, 194.480 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.500 - 3.510 |
R-factor | 0.2257 |
Rwork | 0.223 |
R-free | 0.27100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zpo |
RMSD bond length | 0.004 |
RMSD bond angle | 0.889 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 3.840 |
High resolution limit [Å] | 3.500 | 3.500 |
Rmerge | 0.215 | 0.830 |
Rmeas | 0.232 | 0.896 |
Rpim | 0.086 | 0.335 |
Number of reflections | 7545 | 340 |
<I/σ(I)> | 8.3 | 2.9 |
Completeness [%] | 67.6 | 12.5 |
Redundancy | 7.1 | 7.1 |
CC(1/2) | 0.997 | 0.829 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 293 | 10% (w/v) PEG8000, 20% ethylene glycol, 10% Morpheus Amino Acids (Molecular Dimensions), and 0.1 M Morpheus Buffer System 2 (Hepes/MOPS buffer) pH 7.5 |