7IMG

Group deposition for crystallographic fragment screening of SARS-CoV-2 nucleocapsid protein (CTD) -- Crystal Structure of SARS-CoV-2 nucleocapsid protein (CTD) in complex with Z1267882044 (Nprot-x0392)

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I04-1
Synchrotron site	Diamond
Beamline	I04-1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2020-08-12
Detector	DECTRIS EIGER2 XE 9M
Wavelength(s)	0.91261
Spacegroup name	I 41
Unit cell lengths	88.671, 88.671, 39.060
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	62.700 - 1.680
R-factor	0.20448
Rwork	0.201
R-free	0.26789
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	6yun
RMSD bond length	0.005
RMSD bond angle	1.405
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	REFMAC (5.8.0267)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	44.336	1.802
High resolution limit [Å]	1.681	1.681
Rmerge	0.065	0.826
Rmeas	0.071	0.919
Rpim	0.028	0.391
Total number of observations	59363	2406
Number of reflections	9352	467
<I/σ(I)>	12.1	1.7
Completeness [%]	53.6
Redundancy	6.3	5.2

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	7.8	298	0.1 M HEPES, pH 7.8, 10 % isopropanol, 23 % PEG4000