7IDL
PanDDA analysis group deposition -- SARS-CoV-2 Nsp1 crystal D12 (dataset 1) from the KIT library screening campaign, data used for ground state calculation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-05-02 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 36.574, 36.574, 141.664 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.420 - 2.190 |
R-factor | 0.1899 |
Rwork | 0.179 |
R-free | 0.38070 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.019 |
RMSD bond angle | 1.781 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.570 | 2.220 |
High resolution limit [Å] | 2.180 | 2.180 |
Rmerge | 0.543 | 3.418 |
Rmeas | 0.569 | 3.570 |
Rpim | 0.167 | 1.018 |
Total number of observations | 63510 | 3165 |
Number of reflections | 5576 | 266 |
<I/σ(I)> | 1.4 | 0.1 |
Completeness [%] | 100.0 | |
Redundancy | 11.4 | 11.9 |
CC(1/2) | 0.932 | 0.143 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 293 | 0.1 M HEPES pH 7.5 and 25% (w/v) PEG 3350. Reproducibility was improved by seeding. |