7I2K

Group deposition for crystallographic fragment screening of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 -- Crystal structure of the NS5 RNA-dependent RNA polymerase from Dengue virus serotype 2 in complex with Z1343518214 (DNV2_NS5A-x0503)

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I04-1
Synchrotron site	Diamond
Beamline	I04-1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-12-02
Detector	DECTRIS EIGER2 XE 9M
Wavelength(s)	0.92124
Spacegroup name	I 2 2 2
Unit cell lengths	82.275, 116.039, 147.914
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	91.300 - 1.900
R-factor	0.19965
Rwork	0.197
R-free	0.23993
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.006
RMSD bond angle	1.404
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	REFMAC (5.8.0267)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	91.270	1.940
High resolution limit [Å]	1.900	1.900
Rmerge	0.253	5.242
Rmeas	0.262	5.445
Rpim	0.070	1.466
Total number of observations	765064	47400
Number of reflections	55818	3475
<I/σ(I)>	7.7	0.4
Completeness [%]	99.9
Redundancy	13.7	13.6
CC(1/2)	0.997	0.355

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	6.5	293.15	350 mM Magnesium chloride, 10% PEG 4000, 100 mM MES, pH 6.5