7HMR
PanDDA analysis group deposition -- Crystal Structure of TRIM21 in complex with Z1267882044
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-05-24 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.92124 |
Spacegroup name | I 4 |
Unit cell lengths | 95.423, 95.423, 45.794 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.320 - 1.150 |
R-factor | 0.1771 |
Rwork | 0.176 |
R-free | 0.19160 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.014 |
RMSD bond angle | 1.898 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.7) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.290 | 41.290 | 1.170 |
High resolution limit [Å] | 1.150 | 6.270 | 1.150 |
Rmerge | 0.042 | 0.049 | 0.317 |
Rmeas | 0.044 | 0.051 | 0.448 |
Rpim | 0.012 | 0.015 | 0.317 |
Total number of observations | 589970 | 6226 | 320 |
Number of reflections | 61624 | 488 | 311 |
<I/σ(I)> | 27.9 | 93.3 | 0.9 |
Completeness [%] | 83.1 | 99.7 | 8.5 |
Redundancy | 9.6 | 12.8 | 1 |
CC(1/2) | 0.999 | 0.994 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 4 % PEG 400, 2 M AmmSO4, 0.1 M HEPES pH 8 |