7HFS

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-0005998

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ALS BEAMLINE 8.3.1
Synchrotron site	ALS
Beamline	8.3.1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-10-27
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.88557
Spacegroup name	P 43
Unit cell lengths	88.827, 88.827, 39.470
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	44.410 - 1.020
R-factor	0.1394
Rwork	0.139
R-free	0.15240
Structure solution method	MOLECULAR REPLACEMENT
Data reduction software	XDS (Jun 30, 2023)
Data scaling software	Aimless (0.7.15)
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.21.1_5286)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	44.410	44.410	1.040
High resolution limit [Å]	1.020	5.590	1.020
Rmerge	0.070	0.059	0.854
Rmeas	0.076	0.064	0.940
Rpim	0.029	0.024	0.384
Total number of observations	1016509	7086	43889
Number of reflections	156367	1036	7581
<I/σ(I)>	12	30.1	1.3
Completeness [%]	99.8	99.8	97.9
Redundancy	6.5	6.8	5.8
CC(1/2)	0.997	0.994	0.813

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	9.5	292	100 mM CHES, 28% PEG 3000