7HFH

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-0004311

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ALS BEAMLINE 8.3.1
Synchrotron site	ALS
Beamline	8.3.1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-10-07
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.88557
Spacegroup name	P 43
Unit cell lengths	88.620, 88.620, 39.353
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	44.310 - 0.990
R-factor	0.1458
Rwork	0.145
R-free	0.15970
Structure solution method	MOLECULAR REPLACEMENT
Data reduction software	XDS (Jun 30, 2023)
Data scaling software	Aimless (0.7.15)
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.21.1_5286)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	44.310	44.310	1.010
High resolution limit [Å]	0.990	5.420	0.990
Rmerge	0.064	0.040	1.254
Rmeas	0.070	0.044	1.427
Rpim	0.027	0.017	0.666
Total number of observations	1065005	7733	32714
Number of reflections	169125	1128	7683
<I/σ(I)>	10.5	31.5	0.6
Completeness [%]	99.6	99.9	91.9
Redundancy	6.3	6.9	4.3
CC(1/2)	0.998	0.998	0.593

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	9.5	292	100 mM CHES, 28% PEG 3000