7HDK

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-0003730

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ALS BEAMLINE 8.3.1
Synchrotron site	ALS
Beamline	8.3.1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-05-20
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.88557
Spacegroup name	P 43
Unit cell lengths	88.719, 88.719, 39.475
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	39.680 - 1.000
R-factor	0.1445
Rwork	0.144
R-free	0.15760
Structure solution method	MOLECULAR REPLACEMENT
Data reduction software	XDS (Jun 30, 2023)
Data scaling software	Aimless (0.7.15)
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.21.1_5286)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	44.360	44.360	1.020
High resolution limit [Å]	1.000	5.480	1.000
Rmerge	0.043	0.027	1.179
Rmeas	0.047	0.029	1.330
Rpim	0.018	0.011	0.599
Total number of observations	1052000	7534	33896
Number of reflections	164903	1094	7453
<I/σ(I)>	15.3	54.2	0.9
Completeness [%]	99.5	99.8	91.3
Redundancy	6.4	6.9	4.5
CC(1/2)	0.999	0.999	0.646

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	9.5	292	100 mM CHES, 28% PEG 3000