7HDA

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with AVI-0003715

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ALS BEAMLINE 8.3.1
Synchrotron site	ALS
Beamline	8.3.1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-05-20
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.88557
Spacegroup name	P 43
Unit cell lengths	88.867, 88.867, 39.511
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	44.430 - 1.020
R-factor	0.1467
Rwork	0.146
R-free	0.16140
Structure solution method	MOLECULAR REPLACEMENT
Data reduction software	XDS (Jun 30, 2023)
Data scaling software	Aimless (0.7.15)
Phasing software	PHASER (2.8.3)
Refinement software	PHENIX (1.21.1_5286)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	44.430	44.430	1.040
High resolution limit [Å]	1.020	5.590	1.020
Rmerge	0.044	0.029	1.520
Rmeas	0.048	0.031	1.679
Rpim	0.019	0.012	0.696
Total number of observations	1015217	7156	41866
Number of reflections	156353	1038	7491
<I/σ(I)>	15.9	59.7	0.9
Completeness [%]	99.8	99.9	96.5
Redundancy	6.5	6.9	5.6
CC(1/2)	0.999	0.999	0.604

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP	9.5	292	100 mM CHES, 28% PEG 3000