7H1D
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0011198-001
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-11-12 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9212 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.308, 33.111, 64.302 |
Unit cell angles | 90.00, 101.47, 90.00 |
Refinement procedure
Resolution | 17.190 - 1.190 |
R-factor | 0.1554 |
Rwork | 0.154 |
R-free | 0.18600 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.240 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.020 | 1.200 |
High resolution limit [Å] | 1.140 | 1.140 |
Rmerge | 0.044 | 0.947 |
Rmeas | 0.048 | 1.319 |
Rpim | 0.020 | 0.915 |
Total number of observations | 230429 | 1370 |
Number of reflections | 44326 | 1159 |
<I/σ(I)> | 15.4 | 0.6 |
Completeness [%] | 76.2 | |
Redundancy | 5.2 | 1.2 |
CC(1/2) | 0.998 | 0.465 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M MES (pH 6.50) and 30 % w/v PEG 4000 |