7H12
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0013388-001
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2023-07-17 |
| Detector | DECTRIS EIGER2 XE 9M |
| Wavelength(s) | 0.9212 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 38.230, 33.060, 64.150 |
| Unit cell angles | 90.00, 101.34, 90.00 |
Refinement procedure
| Resolution | 37.480 - 1.150 |
| R-factor | 0.1633 |
| Rwork | 0.162 |
| R-free | 0.19220 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.014 |
| RMSD bond angle | 1.280 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | BUSTER (2.10.4) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 37.480 | 1.180 |
| High resolution limit [Å] | 1.150 | 1.150 |
| Rmerge | 0.090 | 0.855 |
| Rmeas | 0.099 | 1.210 |
| Rpim | 0.039 | 0.855 |
| Total number of observations | 217001 | 337 |
| Number of reflections | 39392 | 322 |
| <I/σ(I)> | 11 | 0.8 |
| Completeness [%] | 70.3 | |
| Redundancy | 5.5 | 1 |
| CC(1/2) | 0.995 | 0.487 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M MES (pH 6.50) and 30 % w/v PEG 4000 |
