7H08
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0012346-001
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-07-17 |
Detector | DECTRIS EIGER2 XE 9M |
Wavelength(s) | 0.9212 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.345, 33.102, 64.160 |
Unit cell angles | 90.00, 101.20, 90.00 |
Refinement procedure
Resolution | 17.730 - 1.300 |
R-factor | 0.1974 |
Rwork | 0.196 |
R-free | 0.21950 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.140 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.440 | 1.320 |
High resolution limit [Å] | 1.300 | 1.300 |
Rmerge | 0.125 | 1.248 |
Rmeas | 0.137 | 1.596 |
Rpim | 0.055 | 0.969 |
Total number of observations | 213497 | 3660 |
Number of reflections | 38022 | 1427 |
<I/σ(I)> | 5.8 | 0.2 |
Completeness [%] | 97.1 | |
Redundancy | 5.6 | 2.6 |
CC(1/2) | 0.993 | 0.331 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M MES (pH 6.50) and 30 % w/v PEG 4000 |