7GZQ
Crystal structure of SARS-CoV-2 NSP3 Macrodomain in complex with ASAP-0008379-001
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2023-03-08 |
| Detector | DECTRIS EIGER2 XE 9M |
| Wavelength(s) | 0.9212 |
| Spacegroup name | P 43 |
| Unit cell lengths | 88.958, 88.958, 39.496 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 88.960 - 1.430 |
| R-factor | 0.2039 |
| Rwork | 0.202 |
| R-free | 0.24250 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.011 |
| RMSD bond angle | 1.040 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | BUSTER (2.10.4) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 88.980 | 1.340 |
| High resolution limit [Å] | 1.320 | 1.320 |
| Rmerge | 0.170 | 3.358 |
| Rmeas | 0.177 | 3.789 |
| Rpim | 0.049 | 1.690 |
| Total number of observations | 813416 | 16332 |
| Number of reflections | 48229 | 3627 |
| <I/σ(I)> | 3.6 | 0 |
| Completeness [%] | 99.9 | |
| Redundancy | 11.2 | 4.5 |
| CC(1/2) | 0.996 | 0.287 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 9.5 | 293 | 100 mM CHES (pH 9.5) and 30% PEG-3000 |
