7GNL
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with NIR-WEI-dcc3321b-1 (Mpro-P2757)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-01-21 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91788 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.909, 99.702, 104.233 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 72.050 - 1.681 |
R-factor | 0.2189 |
Rwork | 0.218 |
R-free | 0.23930 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.020 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (14-JUN-2023)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 104.230 | 1.710 |
High resolution limit [Å] | 1.680 | 1.680 |
Rmerge | 0.128 | 2.095 |
Rmeas | 0.139 | 2.270 |
Rpim | 0.054 | 0.867 |
Total number of observations | 549765 | 28179 |
Number of reflections | 81227 | 4077 |
<I/σ(I)> | 9.4 | 0.8 |
Completeness [%] | 100.0 | |
Redundancy | 6.8 | 6.9 |
CC(1/2) | 0.994 | 0.489 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |