7GNG
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with EDJ-MED-705e09b8-1 (Mpro-P2607)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91788 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 68.039, 101.553, 104.783 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.020 - 1.769 |
R-factor | 0.2187 |
Rwork | 0.217 |
R-free | 0.24960 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.970 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (20-OCT-2021)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.924 | 1.936 |
High resolution limit [Å] | 1.769 | 1.769 |
Rmerge | 0.110 | 1.232 |
Rmeas | 0.120 | 1.339 |
Rpim | 0.046 | 0.519 |
Total number of observations | 283211 | 13430 |
Number of reflections | 42261 | 2113 |
<I/σ(I)> | 10 | 1.4 |
Completeness [%] | 59.1 | |
Redundancy | 6.7 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |