7GMF
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with MAT-POS-e119ab4f-3 (Mpro-P2178)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91788 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.811, 100.022, 103.920 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 72.060 - 1.805 |
R-factor | 0.2172 |
Rwork | 0.216 |
R-free | 0.23740 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.960 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (20-OCT-2021)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.065 | 1.957 |
High resolution limit [Å] | 1.805 | 1.805 |
Rmerge | 0.055 | 0.540 |
Rmeas | 0.060 | 0.630 |
Rpim | 0.024 | 0.321 |
Total number of observations | 279906 | 8356 |
Number of reflections | 47438 | 2373 |
<I/σ(I)> | 15.3 | 1.8 |
Completeness [%] | 72.2 | |
Redundancy | 5.9 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |