7GKG
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with EDJ-MED-2f867453-1 (Mpro-P0878)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91199 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.190, 98.520, 102.940 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.170 - 2.030 |
R-factor | 0.2335 |
Rwork | 0.231 |
R-free | 0.27890 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.010 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (20-APR-2021)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 71.247 | 2.086 |
High resolution limit [Å] | 1.811 | 1.811 |
Rmerge | 0.142 | 1.052 |
Rmeas | 0.154 | 1.154 |
Rpim | 0.059 | 0.465 |
Total number of observations | 215612 | 9356 |
Number of reflections | 32477 | 1625 |
<I/σ(I)> | 9.8 | 1.8 |
Completeness [%] | 51.5 | |
Redundancy | 6.6 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |