7GK1
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with EDJ-MED-9e38fd34-1 (Mpro-P0766)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-04-14 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91199 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.062, 98.646, 103.045 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.260 - 1.937 |
R-factor | 0.2218 |
Rwork | 0.219 |
R-free | 0.26890 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.000 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (20-APR-2021)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 71.258 | 2.206 |
High resolution limit [Å] | 1.936 | 1.936 |
Rmerge | 0.586 | 1.225 |
Rmeas | 0.647 | 1.336 |
Rpim | 0.268 | 0.527 |
Total number of observations | 156311 | 7872 |
Number of reflections | 24770 | 1239 |
<I/σ(I)> | 4.5 | 1.6 |
Completeness [%] | 48.0 | |
Redundancy | 6.3 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |