7GGJ
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with BEN-DND-4f474d93-1 (Mpro-x12659)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91264 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 113.948, 53.415, 44.456 |
Unit cell angles | 90.00, 101.17, 90.00 |
Refinement procedure
Resolution | 55.900 - 1.801 |
R-factor | 0.1854 |
Rwork | 0.183 |
R-free | 0.23390 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.980 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3 (18-SEP-2020)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.900 | 1.840 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.147 | 1.516 |
Rmeas | 0.177 | 1.836 |
Rpim | 0.098 | 1.023 |
Total number of observations | 77232 | 4406 |
Number of reflections | 24333 | 1426 |
<I/σ(I)> | 4.7 | 0.3 |
Completeness [%] | 99.7 | |
Redundancy | 3.2 | 3.1 |
CC(1/2) | 0.991 | 0.454 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |