7GEO
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with EDJ-MED-50fe53e8-3 (Mpro-x11493)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2020-09-15 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91267 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 113.420, 53.108, 44.495 |
| Unit cell angles | 90.00, 103.12, 90.00 |
Refinement procedure
| Resolution | 55.230 - 1.499 |
| R-factor | 0.1898 |
| Rwork | 0.188 |
| R-free | 0.22430 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.980 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | BUSTER (2.10.3 (18-SEP-2020)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 55.240 | 1.520 |
| High resolution limit [Å] | 1.500 | 1.500 |
| Rmerge | 0.095 | 1.070 |
| Rmeas | 0.116 | 1.369 |
| Rpim | 0.065 | 0.843 |
| Total number of observations | 123266 | 4781 |
| Number of reflections | 41223 | 1977 |
| <I/σ(I)> | 8.8 | 0.5 |
| Completeness [%] | 99.5 | |
| Redundancy | 3 | 2.4 |
| CC(1/2) | 0.995 | 0.246 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |
