7GE0
Group deposition SARS-CoV-2 main protease in complex with inhibitors from the COVID Moonshot -- Crystal Structure of SARS-CoV-2 main protease in complex with EDJ-MED-6af13d92-2 (Mpro-x11276)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-08-04 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91255 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 113.833, 53.322, 44.444 |
Unit cell angles | 90.00, 101.38, 90.00 |
Refinement procedure
Resolution | 55.800 - 1.701 |
R-factor | 0.2113 |
Rwork | 0.209 |
R-free | 0.24770 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.010 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (14-JUN-2023)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.770 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.117 | 1.391 |
Rmeas | 0.141 | 1.735 |
Rpim | 0.079 | 1.023 |
Total number of observations | 88818 | 3920 |
Number of reflections | 28647 | 1467 |
<I/σ(I)> | 7.9 | 0.8 |
Completeness [%] | 99.5 | |
Redundancy | 3.1 | 2.7 |
CC(1/2) | 0.992 | 0.299 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 15% PEG 4K, 5% DMSO, 0.1M MES pH 6.5 |