7G7P
Crystal Structure of rat Autotaxin in complex with 3-bromo-5-[4-(trifluoromethyl)phenyl]pyrazin-2-amine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-03-02 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.999850 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 84.480, 91.902, 119.699 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.950 - 2.100 |
R-factor | 0.1884 |
Rwork | 0.186 |
R-free | 0.24140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.014 |
RMSD bond angle | 1.685 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.950 | 45.950 | 2.150 |
High resolution limit [Å] | 2.100 | 9.390 | 2.100 |
Rmerge | 0.154 | 0.029 | 2.338 |
Rmeas | 0.167 | 0.032 | 2.530 |
Total number of observations | 363117 | ||
Number of reflections | 55112 | 709 | 4034 |
<I/σ(I)> | 10.69 | 44.83 | 0.96 |
Completeness [%] | 99.9 | 98.5 | 100 |
Redundancy | 6.589 | 6.047 | 6.848 |
CC(1/2) | 0.997 | 0.999 | 0.299 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |