7G6N
Crystal Structure of rat Autotaxin in complex with 3-[5-cyclopropyl-6-(oxan-4-yloxy)pyridin-3-yl]-4-methyl-1H-1,2,4-triazol-5-one
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-10 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.000070 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 84.281, 91.405, 119.929 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.090 - 1.810 |
R-factor | 0.1949 |
Rwork | 0.193 |
R-free | 0.23300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.013 |
RMSD bond angle | 1.567 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 43.090 | 43.090 | 1.860 |
High resolution limit [Å] | 1.810 | 8.090 | 1.810 |
Rmerge | 0.107 | 0.024 | 2.256 |
Rmeas | 0.116 | 0.026 | 2.439 |
Total number of observations | 566160 | ||
Number of reflections | 84989 | 1081 | 6239 |
<I/σ(I)> | 12.1 | 49.68 | 0.89 |
Completeness [%] | 99.9 | 98.8 | 99.8 |
Redundancy | 6.662 | 5.751 | 6.846 |
CC(1/2) | 0.999 | 0.999 | 0.336 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |