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7G50

Crystal Structure of rat Autotaxin in complex with 3-[[2-methylsulfanyl-5-(2,4,6-trichlorobenzoyl)phenyl]methyl]-1H-pyridazin-6-one, i.e. SMILES c1(c(ccc(c1)C(=O)c1c(cc(cc1Cl)Cl)Cl)SC)CC1=NNC(=O)C=C1 with IC50=1.03291 microM

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2012-08-21
DetectorPSI PILATUS 6M
Wavelength(s)0.999960
Spacegroup nameP 21 21 21
Unit cell lengths84.216, 92.018, 120.717
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.010 - 2.040
R-factor0.2075
Rwork0.205
R-free0.25610
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)inhouse model
RMSD bond length0.014
RMSD bond angle1.691
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.7.0027)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.01046.0102.090
High resolution limit [Å]2.0409.1202.040
Rmerge0.1870.0401.704
Rmeas0.2030.0441.850
Total number of observations387247
Number of reflections604237784411
<I/σ(I)>9.3939.481.29
Completeness [%]99.998.7100
Redundancy6.4096.1886.576
CC(1/2)0.9950.9990.400
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.529315.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL

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