7G34
Crystal Structure of rat Autotaxin in complex with 3-[(4-chlorophenyl)methyl]-5-methyl-5-(4-methylphenyl)imidazolidine-2,4-dione, i.e. SMILES N1(C(=O)N[C@](C1=O)(c1ccc(cc1)C)C)Cc1ccc(Cl)cc1 with IC50=0.956439 microM
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X10SA |
| Synchrotron site | SLS |
| Beamline | X10SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-03-22 |
| Detector | PSI PILATUS 6M |
| Wavelength(s) | 0.999960 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 84.048, 91.742, 119.941 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 48.820 - 1.980 |
| R-factor | 0.1865 |
| Rwork | 0.184 |
| R-free | 0.22560 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | inhouse model |
| RMSD bond length | 0.013 |
| RMSD bond angle | 1.536 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.820 | 48.820 | 2.030 |
| High resolution limit [Å] | 1.980 | 8.850 | 1.980 |
| Rmerge | 0.123 | 0.047 | 1.484 |
| Rmeas | 0.133 | 0.052 | 1.609 |
| Total number of observations | 430090 | ||
| Number of reflections | 65223 | 841 | 4766 |
| <I/σ(I)> | 10.15 | 32.59 | 1.29 |
| Completeness [%] | 99.9 | 98.4 | 100 |
| Redundancy | 6.594 | 5.742 | 6.693 |
| CC(1/2) | 0.998 | 0.998 | 0.480 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |






