7FUM
Crystal Structure of human cyclic GMP-AMP synthase in complex with 2-[(4-benzylpiperazin-1-yl)methyl]-6-(2-chloro-4-methylphenyl)-1H-benzimidazole-4-carboxylic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-22 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.000050 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 44.966, 59.560, 165.119 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 59.560 - 2.060 |
R-factor | 0.235 |
Rwork | 0.233 |
R-free | 0.26900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.010 |
RMSD bond angle | 1.100 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | BUSTER (2.11.7) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.560 | 59.560 | 2.110 |
High resolution limit [Å] | 2.060 | 9.210 | 2.060 |
Rmerge | 0.036 | 0.024 | 2.815 |
Rmeas | 0.039 | 0.027 | 3.046 |
Total number of observations | 181808 | ||
Number of reflections | 28304 | 388 | 2036 |
<I/σ(I)> | 19.02 | 50.31 | 0.62 |
Completeness [%] | 99.8 | 98.5 | 99.9 |
Redundancy | 6.423 | 5.008 | 6.838 |
CC(1/2) | 0.999 | 0.999 | 0.243 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 10-12 mg/mL protein in 25 mM Tris/HCl pH7.5, 500mM NaCl, 2mM TCEP, supplemented with 10x molar excess of ligand and, if needed, with 10 mM MgCl2 and 5mM ATP, then mixed 1:1 with reservoir of the Procomplex screen. Several conditions resulted in crystals. |