7FS3
Structure of liver pyruvate kinase in complex with allosteric modulator 15
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-17 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.91788 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 209.686, 113.230, 189.296 |
Unit cell angles | 90.00, 91.71, 90.00 |
Refinement procedure
Resolution | 189.210 - 1.655 |
R-factor | 0.1965 |
Rwork | 0.196 |
R-free | 0.21290 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.850 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (16-JUL-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 189.212 | 189.212 | 1.808 |
High resolution limit [Å] | 1.655 | 4.945 | 1.655 |
Rmerge | 0.078 | 0.044 | 0.970 |
Rpim | 0.039 | 0.023 | 0.433 |
Total number of observations | 1984841 | ||
Number of reflections | 400423 | 20021 | 20019 |
<I/σ(I)> | 9.8 | 25.4 | 1.6 |
Completeness [%] | 95.6 | ||
Redundancy | 5 | 4.7 | 5.9 |
CC(1/2) | 0.998 | 0.997 | 0.689 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 100 mM HEPES/MOPS, 10% PEG8000, 20% ethylene glycol, 10 mM phenylalanine, 20 mM sodium oxalate |