7FRY
Structure of liver pyruvate kinase in complex with allosteric modulator 6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-09 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 1.000032 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 209.386, 113.888, 189.794 |
Unit cell angles | 90.00, 90.54, 90.00 |
Refinement procedure
Resolution | 104.690 - 1.958 |
R-factor | 0.2018 |
Rwork | 0.201 |
R-free | 0.22280 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 0.920 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (16-JUL-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 104.688 | 104.688 | 2.208 |
High resolution limit [Å] | 1.958 | 6.207 | 1.958 |
Rmerge | 0.096 | 0.045 | 1.127 |
Rpim | 0.039 | 0.018 | 0.456 |
Total number of observations | 1429316 | ||
Number of reflections | 204303 | 10214 | 10215 |
<I/σ(I)> | 11 | 27.7 | 1.8 |
Completeness [%] | 94.2 | ||
Redundancy | 7 | 6.6 | 7 |
CC(1/2) | 0.997 | 0.997 | 0.540 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 100 mM HEPES/MOPS, 10% PEG8000, 20% ethylene glycol, 10 mM phenylalanine, 20 mM sodium oxalate |