7FAY
Crystal structure of SARS-CoV-2 main protease in complex with (R)-1a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-17 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.978516 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 114.474, 53.472, 45.132 |
Unit cell angles | 90.00, 102.35, 90.00 |
Refinement procedure
Resolution | 19.590 - 2.100 |
R-factor | 0.1947 |
Rwork | 0.193 |
R-free | 0.23360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c7p |
RMSD bond length | 0.008 |
RMSD bond angle | 0.990 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.590 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.076 | 0.647 |
Rpim | 0.039 | 0.336 |
Number of reflections | 15635 | 1283 |
<I/σ(I)> | 11.9 | 2.2 |
Completeness [%] | 99.6 | |
Redundancy | 4.7 | |
CC(1/2) | 0.997 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M ammonium acetate, 0.1 M HEPES pH 7.5, 25% w/v PEG3350 |