7F8Z
RNA kink-turn motif with 2-aminopurine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-19 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 65.962, 87.726, 124.273 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.040 - 3.000 |
R-factor | 0.1809 |
Rwork | 0.176 |
R-free | 0.22860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c40 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.040 | 100.000 | 3.100 |
High resolution limit [Å] | 3.000 | 5.000 | 3.000 |
Rmerge | 0.099 | 0.050 | 0.396 |
Rmeas | 0.109 | 0.055 | 0.436 |
Number of reflections | 14856 | 3307 | 1348 |
<I/σ(I)> | 14.66 | 23.87 | 5.23 |
Completeness [%] | 98.7 | 97.3 | 99.2 |
Redundancy | 5.796 | 5.487 | 5.852 |
CC(1/2) | 0.997 | 0.998 | 0.945 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | MPD, spermine tetrahydrochloride, potassium chloride |