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7F6Y

Complex Structure of antibody BD-503 and RBD-E484K of COVID-19

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-06
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.1
Spacegroup nameC 2 2 21
Unit cell lengths80.280, 149.071, 146.686
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution19.990 - 3.000
R-factor0.2031
Rwork0.198
R-free0.25300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7ejz
RMSD bond length0.009
RMSD bond angle1.053
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0003.110
High resolution limit [Å]3.0003.000
Rmerge0.2000.760
Rmeas0.2200.820
Rpim0.0800.300
Number of reflections338101762
<I/σ(I)>8.362.12
Completeness [%]99.5
Redundancy6.8
CC(1/2)0.9900.820
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2910.1M Magnesium chloride hexahydrate, 0.1M Sodium citrate, pH 5.0, 15% (w/v) PEG 4000

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