7F5M
Crystal structure of Sas5 YEATS domain in complex with H3K27bz peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97853 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 126.578, 126.578, 48.708 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 27.400 - 2.400 |
R-factor | 0.2294 |
Rwork | 0.227 |
R-free | 0.27440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5d7e |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASES |
Refinement software | PHENIX (1.18.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.440 |
High resolution limit [Å] | 2.400 | 6.510 | 2.400 |
Rmerge | 0.080 | 0.031 | 0.899 |
Rmeas | 0.087 | 0.034 | 0.971 |
Rpim | 0.033 | 0.013 | 0.364 |
Total number of observations | 118325 | ||
Number of reflections | 17766 | 953 | 894 |
<I/σ(I)> | 5.6 | ||
Completeness [%] | 99.9 | 99.2 | 100 |
Redundancy | 6.7 | 6.2 | 6.9 |
CC(1/2) | 0.999 | 0.703 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 289 | 30% (w/v) PEG 4000, 0.2M Lithium sulfate, 0.1M Tris-Hcl |