7F5K
Crystal structure of TCR4-1 ectodomain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2021-05-19 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.07 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.874, 73.790, 170.337 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.722 - 3.000 |
R-factor | 0.229020807595 |
Rwork | 0.225 |
R-free | 0.31084 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7ea6 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.340 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.722 | 3.160 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.185 | 0.973 |
Rmeas | 0.200 | 1.067 |
Rpim | 0.075 | 0.430 |
Number of reflections | 17068 | 2452 |
<I/σ(I)> | 9.7 | |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 6.9 | 6.1 |
CC(1/2) | 0.990 | 0.651 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1M Bis-tris (pH 5.5), 0.2M lithium acetate, 17% (w/v) polyethylene glycol 10000 |