7F1B
Odinarchaeota tubulin H393D mutant, in a pseudo protofilament arrangement, after GTP hydrolysis and phosphate release
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-04 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.883, 94.428, 100.846 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.550 - 2.400 |
Rwork | 0.208 |
R-free | 0.25860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7evh |
RMSD bond length | 0.002 |
RMSD bond angle | 0.497 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (v1.17.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.550 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.117 | 0.605 |
Rmeas | 0.123 | 0.657 |
Rpim | 0.035 | 0.252 |
Number of reflections | 15927 | 1616 |
<I/σ(I)> | 13.8 | |
Completeness [%] | 99.9 | 99.7 |
Redundancy | 11.3 | 6.7 |
CC(1/2) | 0.912 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 293 | 25% PEG 1500 0.1 M MMT (1 DL-malic acid: 2 MES: 2 Tris base), pH 9.0 soak: 10 mM GTP (1 h) then no GTP (14 days) 1 mM MgCl2, 0.1 M KCl |