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7F1B

Odinarchaeota tubulin H393D mutant, in a pseudo protofilament arrangement, after GTP hydrolysis and phosphate release

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL41XU
Synchrotron siteSPring-8
BeamlineBL41XU
Temperature [K]100
Detector technologyPIXEL
Collection date2021-06-04
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths40.883, 94.428, 100.846
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.550 - 2.400
Rwork0.208
R-free0.25860
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7evh
RMSD bond length0.002
RMSD bond angle0.497
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (v1.17.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.5502.490
High resolution limit [Å]2.4002.400
Rmerge0.1170.605
Rmeas0.1230.657
Rpim0.0350.252
Number of reflections159271616
<I/σ(I)>13.8
Completeness [%]99.999.7
Redundancy11.36.7
CC(1/2)0.912
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP929325% PEG 1500 0.1 M MMT (1 DL-malic acid: 2 MES: 2 Tris base), pH 9.0 soak: 10 mM GTP (1 h) then no GTP (14 days) 1 mM MgCl2, 0.1 M KCl

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PDB entries from 2024-06-26

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